Journal Articles
Pascoal, S,
Shimadzu, H, Mashoodh, R, Kilner, R (2023)
Parental care results in a greater mutation load, for which it is also a phenotypic antidote,
Proceedings of the Royal Society B: Biological Sciences, 290(1999), 20230115, ISSN: 0962-8452. DOI:
10.1098/rspb.2023.0115.
Xu, W-B, Blowes, SA, Brambilla, V, Chow, CFY, Fontrodona-Eslava, A, Martins, IS, McGlinn, D, Moyes, F, Sagouis, A,
Shimadzu, H, van Klink, R, Magurran, AE, Gotelli, NJ, McGill, BJ, Dornelas, M, Chase, JM (2023)
Regional occupancy increases for widespread species but decreases for narrowly distributed species in metacommunity time series,
Nature Communications, 14, 1463, DOI:
10.1038/s41467-023-37127-2.
Blowes, SA, Daskalova, GN, Dornelas, M, Engel, T, Gotelli, NJ, Magurran, AE, Martins, IS, McGill, B, McGlinn, DJ, Sagouis, A,
Shimadzu, H, Supp, SR, Chase, JM (2022)
Local biodiversity change reflects interactions among changing abundance, evenness, and richness,
Ecology, 103(12), e3820, ISSN: 0012-9658. DOI:
10.1002/ecy.3820.
Shimadzu, H and Wang, H (2022)
Estimating allometric energy allocation between somatic and gonadic growth,
Methods in Ecology and Evolution, 13(2), pp.407-418, ISSN: 2041-210X. DOI:
10.1111/2041-210x.13761.
Gotelli, NJ, Moyes, F, Antão, LH, Blowes, SA, Dornelas, M, McGill, BJ, Penny, A, Schipper, AM,
Shimadzu, H, Supp, SR, Waldock, CA, Magurran, AE (2022)
Long‐term changes in temperate marine fish assemblages are driven by a small subset of species,
Global Change Biology, 28(1), pp.46-53, ISSN: 1354-1013. DOI:
10.1111/gcb.15947.
Dick, J, Ladosz, P, Ben-Iwhiwhu, E,
Shimadzu, H, Kinnell, P, Pilly, PK, Kolouri, S, Soltoggio, A (2020)
Detecting Changes and Avoiding Catastrophic Forgetting in Dynamic Partially Observable Environments,
Frontiers in Neurorobotics, 14, DOI:
10.3389/fnbot.2020.578675.
Takahashi, K and
Shimadzu, H (2020)
Detecting multiple spatial disease clusters: information criterion and scan statistic approach,
International Journal of Health Geographics, 19(1), 33, DOI:
10.1186/s12942-020-00228-y.
Dornelas, M, Gotelli, NJ,
Shimadzu, H, Moyes, F, Magurran, AE, McGill, BJ (2019)
A balance of winners and losers in the Anthropocene,
Ecology Letters, 22(5), pp.847-854, ISSN: 1461-023X. DOI:
10.1111/ele.13242.
Takahashi, K and
Shimadzu, H (2018)
Multiple-cluster detection test for purely temporal disease clustering: Integration of scan statistics and generalized linear models,
PLOS ONE, 13(11), pp.e0207821-e0207821, DOI:
10.1371/journal.pone.0207821.
Shimadzu, H (2018)
On species richness and rarefaction: size- and coverage-based techniques quantify different characteristics of richness change in biodiversity,
Journal of Mathematical Biology, 77(5), pp.1363-1381, ISSN: 0303-6812. DOI:
10.1007/s00285-018-1255-5.
Magurran, AE, Deacon, AE, Moyes, F,
Shimadzu, H, Dornelas, M, Phillip, DAT, Ramnarine, IW (2018)
Divergent biodiversity change within ecosystems,
Proceedings of the National Academy of Sciences, 115(8), pp.1843-1847, ISSN: 0027-8424. DOI:
10.1073/pnas.1712594115.
Gotelli, NJ,
Shimadzu, H, Dornelas, M, McGill, B, Moyes, F, Magurran, AE (2017)
Community-level regulation of temporal trends in biodiversity,
Science Advances, 3(7), DOI:
10.1126/sciadv.1700315.
Vellend, M, Dornelas, M, Baeten, L, Beauséjour, R, Brown, CD, De Frenne, P, Elmendorf, SC, Gotelli, NJ, Moyes, F, Myers-Smith, IH, Magurran, AE, McGill, BJ,
Shimadzu, H, Sievers, C (2017)
Estimates of local biodiversity change over time stand up to scrutiny,
Ecology, 98(2), pp.583-590, ISSN: 0012-9658. DOI:
10.1002/ecy.1660.
Shimadzu, H, Foster, SD, Darnell, R (2016)
Imperfect observations in ecological studies,
Environmental and Ecological Statistics, 23(3), pp.337-358, ISSN: 1352-8505. DOI:
10.1007/s10651-016-0342-2.
Shimadzu, H, Dornelas, M, Magurran, AE (2015)
Measuring temporal turnover in ecological communities,
Methods in Ecology and Evolution, 6(12), pp.1384-1394, ISSN: 2041-210X. DOI:
10.1111/2041-210X.12438.
Da Silva, IM, Hill, N,
Shimadzu, H, Soares, AMVM, Dornelas, M (2015)
Spillover effects of a community-managed marine reserve,
PLoS ONE, 10(4), DOI:
10.1371/journal.pone.0111774.
Shimadzu, H and Darnell, R (2015)
Attenuation of species abundance distributions by sampling,
Royal Society Open Science, 2(4), DOI:
10.1098/rsos.140219.
Deacon, AE,
Shimadzu, H, Dornelas, M, Ramnarine, IW, Magurran, AE (2015)
From species to communities: the signature of recreational use on a tropical river ecosystem,
Ecology and Evolution, 5(23), pp.5561-5572, DOI:
10.1002/ece3.1800.
Takahashi, K and
Shimadzu, H (2015)
The daily incidence of out-of-hospital cardiac arrest unexpectedly increases around New Year's Day in Japan,
Resuscitation, 96, pp.156-162, ISSN: 0300-9572. DOI:
10.1016/j.resuscitation.2015.08.003.
Dornelas, M, Gotelli, NJ, McGill, B,
Shimadzu, H, Moyes, F, Sievers, C, Magurran, AE (2014)
Assemblage time series reveal biodiversity change but not systematic loss,
Science, 344(6181), pp.296-299, ISSN: 0036-8075. DOI:
10.1126/science.1248484.
Reeve, AJ, Ojanguren, AF, Deacon, AE,
Shimadzu, H, Ramnarine, IW, Magurran, AE (2014)
Interplay of temperature and light influences wild guppy (Poecilia reticulata) daily reproductive activity,
Biological Journal of the Linnean Society, 111(3), pp.511-520, ISSN: 0024-4066. DOI:
10.1111/bij.12217.
Yano, M,
Shimadzu, H, Endo, T (2014)
Modelling temperature effects on milk production: a study on Holstein cows at a Japanese farm,
SpringerPlus, 3(1), pp.1-11, DOI:
10.1186/2193-1801-3-129.
Shimadzu, H, Dornelas, M, Henderson, PA, Magurran, AE (2013)
Diversity is maintained by seasonal variation in species abundance,
BMC Biology, 11, DOI:
10.1186/1741-7007-11-98.
Foster, SD,
Shimadzu, H, Darnell, R (2012)
Uncertainty in Spatially Predicted Covariates: Is it Ignorable?,
Journal of the Royal Statistical Society Series C: Applied Statistics, 61(4), pp.637-652, ISSN: 0035-9254. DOI:
10.1111/j.1467-9876.2011.01030.x.
Shimadzu, H, Shibata, R, Ohgi, Y (2008)
Modelling swimmers’ speeds over the course of a race,
Journal of Biomechanics, 41(3), pp.549-555, ISSN: 0021-9290. DOI:
10.1016/j.jbiomech.2007.10.007.
Anzai, T,
Shimadzu, H, Endo, T (2008) Modelling duration of necessary and non-necessary activities in daily life: fitting mixture models to Japanese time use survey data,
Proceedings of the 23rd International Workshop on Statistical Modelling, pp.93-98.
Shimadzu, H and Shibata, R (2005) Analysis of Bird Count Series by Local Regression to Explore Environmental Changes,
Journal of the Japan Statistical Society Japanese issue, 34(2), pp.187-207, ISSN: 0389-5602.
Uchida, Y,
Shimadzu, H, Sekimoto, T (2003) The relationship between the avifauna and environmentalchanges at Jiyu-Gakuen in Tokyo: a statistical analysis of thebird-census data for 35 years,
Strix, 21, pp.53-70, ISSN: 0910-6901.
